If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ), 'gf_id' => 'HOM05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000640' ), 'data_identifier' => 'HOM05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05450' => 'bna', 'A01p08800' => 'bna', 'A01p17530' => 'bna', 'A02p08980' => 'bna', 'A02p35520' => 'bna', 'A03p13280' => 'bna', 'A03p47180' => 'bna', 'A06p04060' => 'bna', 'A06p44760' => 'bna', 'A08p23100' => 'bna', 'A09p57530' => 'bna', 'A10p14010' => 'bna', 'Aa31LG11G1850' => 'aar', 'Aa31LG2G21220' => 'aar', 'Aa31LG3G12490' => 'aar', 'Aa31LG3G630' => 'aar', 'Aa31LG6G15090' => 'aar', 'Aa31sc219G10' => 'aar', 'Aa31sc320G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2726' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.591' => 'aag', 'Actinidia06528' => 'ach', 'Actinidia13610' => 'ach', 'Actinidia14690' => 'ach', 'Actinidia18210' => 'ach', 'Actinidia25320' => 'ach', 'Actinidia26620' => 'ach', 'Actinidia28832' => 'ach', 'Actinidia29879' => 'ach', 'Actinidia29880' => 'ach', 'Actinidia30842' => 'ach', 'Actinidia31669' => 'ach', 'Actinidia32111' => 'ach', 'Ah.01g017280' => 'amhyb', 'Ah.03g134510' => 'amhyb', 'Ah.03g141840' => 'amhyb', 'Ah.09g230340' => 'amhyb', 'Ah.10g031520' => 'amhyb', 'Ah.10g034710' => 'amhyb', 'Ah.14g083460' => 'amhyb', 'Ah.16g103260' => 'amhyb', 'AL1G55010' => 'aly', 'AL4G12000' => 'aly', 'AL5G44590' => 'aly', 'AL7G18880' => 'aly', 'AL7G23240' => 'aly', 'AL8G32450' => 'aly', 'AL8G38310' => 'aly', 'Aqoxy3G01849' => 'aox', 'Aqoxy3G03364' => 'aox', 'Aqoxy4G01734' => 'aox', 'Aqoxy5G01329' => 'aox', 'Aqoxy7G01365' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BP8ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1T0QE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WNY7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XE0PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X0VU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KR03J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC1ID1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WYS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6NFJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTRQ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P67WA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PM92F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R57C1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG75HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNH1PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW0PIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3QGNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJHX2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6EJZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE9EQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLU73I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y409TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y84AGT' => 'arhy', 'AT2G22480' => 'ath', 'AT4G26270' => 'ath', 'AT4G29220' => 'ath', 'AT4G32840' => 'ath', 'AT5G47810' => 'ath', 'AT5G56630' => 'ath', 'AT5G61580' => 'ath', 'ATR0057G011' => 'atr', 'ATR0534G001' => 'atr', 'ATR0564G424' => 'atr', 'ATR0629G038' => 'atr', 'ATR0705G176' => 'atr', 'ATR0751G164' => 'atr', 'ATR1128G076' => 'atr', 'Atru.BG.172.p' => 'acertr', 'Atru.chr1.3536' => 'acertr', 'Atru.chr1.3558' => 'acertr', 'Atru.chr1.917' => 'acertr', 'Atru.chr3.1298' => 'acertr', 'Atru.chr7.1507' => 'acertr', 'Atru.chr7.2046' => 'acertr', 'AUR62003284' => 'cqu', 'AUR62005870' => 'cqu', 'AUR62009218' => 'cqu', 'AUR62021361' => 'cqu', 'AUR62022238' => 'cqu', 'AUR62027181' => 'cqu', 'AUR62031952' => 'cqu', 'AUR62032862' => 'cqu', 'AUR62033274' => 'cqu', 'AUR62034395' => 'cqu', 'AUR62039818' => 'cqu', 'AUR62040217' => 'cqu', 'AUR62044125' => 'cqu', 'AUR62044190' => 'cqu', 'BcaB01g03706' => 'bca', 'BcaB01g03950' => 'bca', 'BcaB01g04411' => 'bca', 'BcaB03g12303' => 'bca', 'BcaB03g12304' => 'bca', 'BcaB03g12305' => 'bca', 'BcaB05g22288' => 'bca', 'BcaB07g33475' => 'bca', 'BcaB08g35073' => 'bca', 'BcaB08g36072' => 'bca', 'BcaC01g00345' => 'bca', 'BcaC01g02486' => 'bca', 'BcaC01g02960' => 'bca', 'BcaC01g06435' => 'bca', 'BcaC03g14210' => 'bca', 'BcaC04g20039' => 'bca', 'BcaC04g20066' => 'bca', 'BcaC04g20223' => 'bca', 'BcaC07g41065' => 'bca', 'BcaC08g43519' => 'bca', 'BcaC09g50684' => 'bca', 'BcaC09g51709' => 'bca', 'BcaC09g52080' => 'bca', 'BcaC09g52081' => 'bca', 'BcaNung01321' => 'bca', 'BcaNung01325' => 'bca', 'BcaNung02433' => 'bca', 'BolC1t00598H' => 'bol', 'BolC1t00988H' => 'bol', 'BolC1t02140H' => 'bol', 'BolC2t07624H' => 'bol', 'BolC2t11490H' => 'bol', 'BolC3t13992H' => 'bol', 'BolC3t18062H' => 'bol', 'BolC3t20118H' => 'bol', 'BolC7t43687H' => 'bol', 'BolC7t45051H' => 'bol', 'BolC8t51631H' => 'bol', 'BolC9t57674H' => 'bol', 'BraA01t00518Z' => 'bra', 'BraA01t00829Z' => 'bra', 'BraA01t01464Z' => 'bra', 'BraA01t01706Z' => 'bra', 'BraA02t05967Z' => 'bra', 'BraA02t08552Z' => 'bra', 'BraA03t10640Z' => 'bra', 'BraA03t13846Z' => 'bra', 'BraA06t27349Z' => 'bra', 'BraA08t34269Z' => 'bra', 'BraA09t41144Z' => 'bra', 'BraA10t43492Z' => 'bra', 'C01p06050' => 'bna', 'C01p10320' => 'bna', 'C01p22090' => 'bna', 'C02p15080' => 'bna', 'C03p15550' => 'bna', 'C03p35520' => 'bna', 'C03p57900' => 'bna', 'C03p78730' => 'bna', 'C07p31440' => 'bna', 'C07p45280' => 'bna', 'C07p56780' => 'bna', 'C08p40650' => 'bna', 'C09p48240' => 'bna', 'CAN.G1388.6' => 'can', 'CAN.G1456.7' => 'can', 'CAN.G208.69' => 'can', 'CAN.G247.18' => 'can', 'CAN.G380.3' => 'can', 'CAN.G525.43' => 'can', 'CAN.G547.22' => 'can', 'CAN.G634.8' => 'can', 'CAN.G826.4' => 'can', 'CAN.G9.3' => 'can', 'CANSAT01G2559' => 'cansat', 'CANSAT35G1708' => 'cansat', 'CANSAT56G0129' => 'cansat', 'CANSAT56G0853' => 'cansat', 'CANSAT56G1337' => 'cansat', 'CANSAT56G1787' => 'cansat', 'CANSAT56G2322' => 'cansat', 'CANSAT56G2504' => 'cansat', 'CANSAT56G3163' => 'cansat', 'CANSAT56G3314' => 'cansat', 'CARHR066190' => 'chi', 'CARHR113680' => 'chi', 'CARHR153300' => 'chi', 'CARHR233820' => 'chi', 'CARHR236970' => 'chi', 'CARHR236980' => 'chi', 'CARHR240830' => 'chi', 'CARHR240840' => 'chi', 'CARHR270320' => 'chi', 'CARHR275370' => 'chi', 'Carub.0004s0164' => 'cru', 'Carub.0005s1486' => 'cru', 'Carub.0007s0765' => 'cru', 'Carub.0007s1138' => 'cru', 'Carub.0007s1467' => 'cru', 'Carub.0008s1711' => 'cru', 'Carub.0008s2227' => 'cru', 'Ca_01172_v3' => 'car', 'Ca_04541_v3' => 'car', 'Ca_09338_v3' => 'car', 'Ca_09343_v3' => 'car', 'Ca_09344_v3' => 'car', 'Ca_10368_v3' => 'car', 'Ca_10418_v3' => 'car', 'Ca_13510_v3' => 'car', 'Ca_15567_v3' => 'car', 'Ca_17378_v3' => 'car', 'Ca_25399_v3' => 'car', 'Ca_25595_v3' => 'car', 'CBR_g39504' => 'cbr', 'CBR_g39506' => 'cbr', 'CBR_g9012' => 'cbr', 'Cc02_g04720' => 'ccan', 'Cc06_g10760' => 'ccan', 'Cc06_g23680' => 'ccan', 'Cc06_g23690' => 'ccan', 'Cc07_g14330' => 'ccan', 'Cc08_g09990' => 'ccan', 'Cc09_g00130' => 'ccan', 'CDE02G3788' => 'cde', 'CDE05G0283' => 'cde', 'CDE05G1019' => 'cde', 'CDE05G1418' => 'cde', 'CDE05G1572' => 'cde', 'CDE09G1209' => 'cde', 'CDE09G1266' => 'cde', 'Cfa000010' => 'cfa', 'Cfa003151' => 'cfa', 'Cfa004357' => 'cfa', 'Cfa013390' => 'cfa', 'Cfa013391' => 'cfa', 'Cfa013577' => 'cfa', 'Cfa026353' => 'cfa', 'Ciclev10004702m.g' => 'ccl', 'Ciclev10007886m.g' => 'ccl', 'Ciclev10008181m.g' => 'ccl', 'Ciclev10015031m.g' => 'ccl', 'Ciclev10025255m.g' => 'ccl', 'Ciclev10025337m.g' => 'ccl', 'CiPaw.01G047300' => 'cil', 'CiPaw.02G021600' => 'cil', 'CiPaw.02G144700' => 'cil', 'CiPaw.03G221200' => 'cil', 'CiPaw.07G185100' => 'cil', 'CiPaw.07G201800' => 'cil', 'CiPaw.08G027600' => 'cil', 'CiPaw.10G083900' => 'cil', 'ClCG01G021080' => 'cla', 'ClCG03G015980' => 'cla', 'ClCG07G013400' => 'cla', 'ClCG07G013440' => 'cla', 'ClCG07G016970' => 'cla', 'ClCG10G008720' => 'cla', 'ClCG11G005340' => 'cla', 'COL.COLO4_18274' => 'col', 'COL.COLO4_21006' => 'col', 'COL.COLO4_27338' => 'col', 'COL.COLO4_30534' => 'col', 'COL.COLO4_31954' => 'col', 'COL.COLO4_37340' => 'col', 'Cpa.g.c45843' => 'cpa', 'Cpa.g.sc13.254' => 'cpa', 'Cpa.g.sc13.255' => 'cpa', 'Cpa.g.sc27.198' => 'cpa', 'Cpa.g.sc55.34' => 'cpa', 'Cpa.g.sc7.225' => 'cpa', 'Cpa.g.sc78.43' => 'cpa', 'Cre06.g262900' => 'cre', 'Cre11.g467552' => 'cre', 'Cre12.g553250' => 'cre', 'CsaV3_1G039980' => 'csa', 'CsaV3_3G023440' => 'csa', 'CsaV3_3G023460' => 'csa', 'CsaV3_4G004200' => 'csa', 'CsaV3_4G008960' => 'csa', 'CsaV3_6G048080' => 'csa', 'CSS0000237' => 'camsi', 'CSS0023070' => 'camsi', 'CSS0025809' => 'camsi', 'CSS0028623' => 'camsi', 'CSS0029534' => 'camsi', 'CSS0033468' => 'camsi', 'CSS0034166' => 'camsi', 'CSS0035797' => 'camsi', 'DCAR_000769' => 'dca', 'DCAR_003070' => 'dca', 'DCAR_003452' => 'dca', 'DCAR_004458' => 'dca', 'DCAR_012020' => 'dca', 'DCAR_018077' => 'dca', 'DCAR_028637' => 'dca', 'DCAR_030826' => 'dca', 'Dinv05122' => 'din', 'Dinv06597' => 'din', 'Dinv13625' => 'din', 'Dinv23399' => 'din', 'Dinv27942' => 'din', 'Dinv33753' => 'din', 'Dinv36708' => 'din', 'Dinv42271' => 'din', 'Duzib147G1393' => 'dzi', 'Duzib150G1189' => 'dzi', 'Duzib150G1420' => 'dzi', 'Duzib168G0514' => 'dzi', 'Duzib168G2004' => 'dzi', 'Duzib192G0495' => 'dzi', 'Duzib205G1392' => 'dzi', 'Duzib235G0138' => 'dzi', 'ECA233G4204' => 'eca', 'ECA233G4658' => 'eca', 'ECA234G1554' => 'eca', 'ECA236G0562' => 'eca', 'ECA236G5118' => 'eca', 'ECA240G2559' => 'eca', 'ECA246G4420' => 'eca', 'ECA248G2402' => 'eca', 'EL10Ac2g02972' => 'bvu', 'EL10Ac2g03966' => 'bvu', 'EL10Ac6g13287' => 'bvu', 'EL10Ac6g14793' => 'bvu', 'EL10Ac8g18348' => 'bvu', 'EL10Ac9g21184' => 'bvu', 'EL10As6g23661' => 'bvu', 'Eucgr.A02923' => 'egr', 'Eucgr.C00617' => 'egr', 'Eucgr.C00952' => 'egr', 'Eucgr.C00956' => 'egr', 'Eucgr.C02986' => 'egr', 'Eucgr.C03703' => 'egr', 'Eucgr.D00956' => 'egr', 'Eucgr.F03086' => 'egr', 'Eucgr.I00555' => 'egr', 'Eucgr.L01027' => 'egr', 'FAN01G2149' => 'fan', 'FAN02G0222' => 'fan', 'FAN05G0732' => 'fan', 'FAN06G4972' => 'fan', 'FAN10G4348' => 'fan', 'FAN14G3132' => 'fan', 'FAN15G1536' => 'fan', 'FAN19G1203' => 'fan', 'FAN19G2858' => 'fan', 'FAN20G2287' => 'fan', 'FAN21G0977' => 'fan', 'FAN23G0052' => 'fan', 'FAN23G0763' => 'fan', 'FAN25G3317' => 'fan', 'FAN26G1057' => 'fan', 'FAN26G1907' => 'fan', 'FAN26G2703' => 'fan', 'FAN27G1139' => 'fan', 'FAN28G0679' => 'fan', 'FAN28G1634' => 'fan', 'FvH4_1g06570' => 'fve', 'FvH4_1g19980' => 'fve', 'FvH4_2g35190' => 'fve', 'FvH4_3g00180' => 'fve', 'FvH4_6g32610' => 'fve', 'FvH4_7g26950' => 'fve', 'Glyma.01G005400' => 'gma', 'Glyma.01G024800' => 'gma', 'Glyma.02G040301' => 'gma', 'Glyma.04G086900' => 'gma', 'Glyma.05G224900' => 'gma', 'Glyma.06G088600' => 'gma', 'Glyma.07G014300' => 'gma', 'Glyma.07G126400' => 'gma', 'Glyma.07G269500' => 'gma', 'Glyma.08G031700' => 'gma', 'Glyma.08G199800' => 'gma', 'Glyma.08G280700' => 'gma', 'Glyma.10G194300' => 'gma', 'Glyma.13G353400' => 'gma', 'Glyma.15G020900' => 'gma', 'Glyma.18G145500' => 'gma', 'Glyma.20G195733' => 'gma', 'Gohir.A02G116800' => 'ghi', 'Gohir.A02G130900' => 'ghi', 'Gohir.A03G000015' => 'ghi', 'Gohir.A05G027100' => 'ghi', 'Gohir.A05G176700' => 'ghi', 'Gohir.A06G069100' => 'ghi', 'Gohir.A06G091000' => 'ghi', 'Gohir.A07G022196' => 'ghi', 'Gohir.A07G043400' => 'ghi', 'Gohir.A13G194700' => 'ghi', 'Gohir.D03G042200' => 'ghi', 'Gohir.D03G057550' => 'ghi', 'Gohir.D05G029000' => 'ghi', 'Gohir.D05G180100' => 'ghi', 'Gohir.D06G067800' => 'ghi', 'Gohir.D06G089900' => 'ghi', 'Gohir.D06G090200' => 'ghi', 'Gohir.D07G024200' => 'ghi', 'Gohir.D07G047800' => 'ghi', 'Gohir.D13G200400' => 'ghi', 'Gorai.001G025000' => 'gra', 'Gorai.001G051000' => 'gra', 'Gorai.003G042800' => 'gra', 'Gorai.003G061100' => 'gra', 'Gorai.009G029100' => 'gra', 'Gorai.009G185000' => 'gra', 'Gorai.010G079100' => 'gra', 'Gorai.010G103800' => 'gra', 'Gorai.010G103900' => 'gra', 'Gorai.013G229200' => 'gra', 'GSVIVG01002583001' => 'vvi', 'GSVIVG01003611001' => 'vvi', 'GSVIVG01003613001' => 'vvi', 'GSVIVG01011393001' => 'vvi', 'GSVIVG01013938001' => 'vvi', 'GSVIVG01015271001' => 'vvi', 'GSVIVG01035322001' => 'vvi', 'HanXRQChr01g0005741' => 'han', 'HanXRQChr03g0078011' => 'han', 'HanXRQChr04g0111111' => 'han', 'HanXRQChr06g0172111' => 'han', 'HanXRQChr07g0190021' => 'han', 'HanXRQChr08g0223231' => 'han', 'HanXRQChr16g0518061' => 'han', 'HanXRQChr16g0531211' => 'han', 'Haze_06115' => 'cav', 'Haze_07049' => 'cav', 'Haze_15051' => 'cav', 'Haze_15868' => 'cav', 'Haze_15872' => 'cav', 'Haze_21933' => 'cav', 'Haze_22197' => 'cav', 'Haze_25851' => 'cav', 'Hma1.2p1_0045F.1_g026420' => 'hma', 'Hma1.2p1_0154F.1_g068010' => 'hma', 'Hma1.2p1_0394F.1_g143490' => 'hma', 'Hma1.2p1_0663F.1_g198530' => 'hma', 'Hma1.2p1_1580F.1_g291930' => 'hma', 'HPP92_000531' => 'vpl', 'HPP92_005246' => 'vpl', 'HPP92_005774' => 'vpl', 'HPP92_005817' => 'vpl', 'HPP92_005824' => 'vpl', 'HPP92_007685' => 'vpl', 'HPP92_018910' => 'vpl', 'HPP92_023994' => 'vpl', 'Hund00704' => 'sun', 'Hund07628' => 'sun', 'Hund07629' => 'sun', 'Hund09068' => 'sun', 'Hund13219' => 'sun', 'Hund16545' => 'sun', 'Hund19488' => 'sun', 'Hund26298' => 'sun', 'Lalb_Chr02g0150821' => 'lal', 'Lalb_Chr05g0216491' => 'lal', 'Lalb_Chr11g0064581' => 'lal', 'Lalb_Chr14g0375211' => 'lal', 'Lalb_Chr16g0390971' => 'lal', 'Lalb_Chr16g0392161' => 'lal', 'Lalb_Chr22g0349871' => 'lal', 'Lalb_Chr23g0269751' => 'lal', 'Lj1g0008001' => 'lja', 'Lj1g0014195' => 'lja', 'Lj2C537G2' => 'lonja', 'Lj2g0001436' => 'lja', 'Lj2g0019493' => 'lja', 'Lj3g0023950' => 'lja', 'Lj4C271G9' => 'lonja', 'Lj4g0000185' => 'lja', 'Lj4g0017425' => 'lja', 'Lj4g0018606' => 'lja', 'Lj5g0017921' => 'lja', 'Lj7C395T20' => 'lonja', 'Lj7C669T4' => 'lonja', 'Lj7C697G2' => 'lonja', 'Lj8A47G37' => 'lonja', 'Lj8C567T1' => 'lonja', 'Lj8P46T17' => 'lonja', 'Lju188C0T0' => 'lonja', 'Lsat_1_v5_gn_1_130341' => 'lsa', 'Lsat_1_v5_gn_2_70500' => 'lsa', 'Lsat_1_v5_gn_3_107840' => 'lsa', 'Lsat_1_v5_gn_3_31841' => 'lsa', 'Lsat_1_v5_gn_4_64261' => 'lsa', 'Lsat_1_v5_gn_4_95801' => 'lsa', 'Lsat_1_v5_gn_5_163680' => 'lsa', 'Lsat_1_v5_gn_5_44641' => 'lsa', 'Lsat_1_v5_gn_6_27181' => 'lsa', 'Lsat_1_v5_gn_6_7721' => 'lsa', 'Lsat_1_v5_gn_8_57721' => 'lsa', 'Lsat_1_v5_gn_8_88260' => 'lsa', 'Lsat_1_v5_gn_8_95521' => 'lsa', 'Lsat_1_v5_gn_8_9660' => 'lsa', 'Manes.03G029300' => 'mes', 'Manes.09G077800' => 'mes', 'Manes.09G085200' => 'mes', 'Manes.11G031700' => 'mes', 'Manes.12G128200' => 'mes', 'Manes.13G098500' => 'mes', 'Manes.14G038800' => 'mes', 'Manes.16G076300' => 'mes', 'Manes.16G106600' => 'mes', 'Mapoly0002s0097' => 'mpo', 'Mapoly0031s0093' => 'mpo', 'Mapoly0093s0072' => 'mpo', 'Mapoly0101s0050' => 'mpo', 'Mapoly0101s0051' => 'mpo', 'MBI01_g10306_MAGBIO' => 'mbi', 'MBI02_g18286_MAGBIO' => 'mbi', 'MBI02_g33837_MAGBIO' => 'mbi', 'MBI02_g38812_MAGBIO' => 'mbi', 'MBI02_g39063_MAGBIO' => 'mbi', 'MBI04_g06991_MAGBIO' => 'mbi', 'MBI05_g08279_MAGBIO' => 'mbi', 'MBI15_g37254_MAGBIO' => 'mbi', 'MBI15_g38740_MAGBIO' => 'mbi', 'MBI18_g17413_MAGBIO' => 'mbi', 'MCO12G154' => 'mco', 'MCO13G312' => 'mco', 'MD01G1037400' => 'mdo', 'MD01G1177300' => 'mdo', 'MD02G1068900' => 'mdo', 'MD05G1363600' => 'mdo', 'MD07G1248800' => 'mdo', 'MD07G1248900' => 'mdo', 'MD07G1249000' => 'mdo', 'MD08G1109700' => 'mdo', 'MD09G1200000' => 'mdo', 'MD15G1089400' => 'mdo', 'MD15G1200500' => 'mdo', 'MD15G1315500' => 'mdo', 'MD17G1180600' => 'mdo', 'MD17G1180700' => 'mdo', 'MD17G1180800' => 'mdo', 'Medtr1g090300' => 'mtr', 'Medtr2g100710' => 'mtr', 'Medtr3g110395' => 'mtr', 'Medtr4g062050' => 'mtr', 'Medtr4g079180' => 'mtr', 'Medtr4g134290' => 'mtr', 'Medtr5g032570' => 'mtr', 'Medtr6g079780' => 'mtr', 'Medtr6g090130' => 'mtr', 'Medtr8g069040' => 'mtr', 'Medtr8g102190' => 'mtr', 'MELO3C013009.2' => 'cme', 'MELO3C013010.2' => 'cme', 'MELO3C015428.2' => 'cme', 'MELO3C017646.2' => 'cme', 'MELO3C018966.2' => 'cme', 'MELO3C025948.2' => 'cme', 'MELO3C032442.2' => 'cme', 'MELO3C032910.2' => 'cme', 'Migut.A00175' => 'egut', 'Migut.E01545' => 'egut', 'Migut.F00525' => 'egut', 'Migut.H02313' => 'egut', 'Migut.K00561' => 'egut', 'Migut.K00774' => 'egut', 'Migut.M01468' => 'egut', 'MSTRG.10590' => 'ama', 'MSTRG.14037' => 'ama', 'MSTRG.1668' => 'ama', 'MSTRG.19542' => 'ama', 'MSTRG.23367' => 'ama', 'MSTRG.27220' => 'ama', 'Nitab4.5_0000147g0170' => 'nta', 'Nitab4.5_0000318g0110' => 'nta', 'Nitab4.5_0000902g0100' => 'nta', 'Nitab4.5_0000928g0020' => 'nta', 'Nitab4.5_0001122g0150' => 'nta', 'Nitab4.5_0001309g0010' => 'nta', 'Nitab4.5_0001737g0030' => 'nta', 'Nitab4.5_0002021g0090' => 'nta', 'Nitab4.5_0002021g0100' => 'nta', 'Nitab4.5_0003173g0010' => 'nta', 'Nitab4.5_0004180g0020' => 'nta', 'Nitab4.5_0007739g0030' => 'nta', 'Nitab4.5_0013610g0010' => 'nta', 'Nitab4.5_0020843g0010' => 'nta', 'Nn1g00868' => 'nnu', 'Nn1g05507' => 'nnu', 'Nn1g07705' => 'nnu', 'Nn3g17222' => 'nnu', 'Nn4g23143' => 'nnu', 'Nn5g29937' => 'nnu', 'Nn5g29972' => 'nnu', 'Nn6g35360' => 'nnu', 'Nn8g39016' => 'nnu', 'Oeu000867.2' => 'oeu', 'Oeu018241.1' => 'oeu', 'Oeu030716.1' => 'oeu', 'Oeu038572.1' => 'oeu', 'Oeu038820.2' => 'oeu', 'Oeu042531.1' => 'oeu', 'Oeu048672.1' => 'oeu', 'Oeu055136.2' => 'oeu', 'Oeu057706.1' => 'oeu', 'Os01g0191700' => 'osa', 'Os04g0469500' => 'osa', 'Os05g0194900' => 'osa', 'Os05g0524400' => 'osa', 'Os06g0151900' => 'osa', 'Os08g0439000' => 'osa', 'Os09g0415800' => 'osa', 'Os09g0479800' => 'osa', 'Os10g0405600' => 'osa', 'Peaxi162Scf00064g01529' => 'pax', 'Peaxi162Scf00184g00144' => 'pax', 'Peaxi162Scf00271g00616' => 'pax', 'Peaxi162Scf00447g00064' => 'pax', 'Peaxi162Scf00447g00065' => 'pax', 'Peaxi162Scf00447g00066' => 'pax', 'Peaxi162Scf00569g00013' => 'pax', 'Peaxi162Scf00699g00648' => 'pax', 'Peaxi162Scf00811g00447' => 'pax', 'PGR004G0210' => 'pgr', 'PGR031G2433' => 'pgr', 'PGR042G2109' => 'pgr', 'PGR043G0003' => 'pgr', 'PGR083G2333' => 'pgr', 'PGR102G0998' => 'pgr', 'PGR102G1373' => 'pgr', 'PGR142G1027' => 'pgr', 'PGSC0003DMG400016208' => 'stu', 'PGSC0003DMG400017413' => 'stu', 'PGSC0003DMG400019734' => 'stu', 'PGSC0003DMG400025455' => 'stu', 'PGSC0003DMG400027554' => 'stu', 'PGSC0003DMG400045386' => 'stu', 'PGSC0003DMG402023631' => 'stu', 'Phvul.002G148700' => 'pvu', 'Phvul.002G306800' => 'pvu', 'Phvul.003G088700' => 'pvu', 'Phvul.003G289600' => 'pvu', 'Phvul.004G173900' => 'pvu', 'Phvul.005G165100' => 'pvu', 'Phvul.007G136000' => 'pvu', 'Phvul.009G112450' => 'pvu', 'Phvul.010G143900' => 'pvu', 'Phvul.011G134700' => 'pvu', 'Potri.001G079450' => 'ptr', 'Potri.001G079501' => 'ptr', 'Potri.003G151100' => 'ptr', 'Potri.006G152600' => 'ptr', 'Potri.006G235066' => 'ptr', 'Potri.006G235132' => 'ptr', 'Potri.007G010300' => 'ptr', 'Potri.016G002700' => 'ptr', 'Potri.018G069200' => 'ptr', 'Pp3c11_4880' => 'ppa', 'Pp3c14_23320' => 'ppa', 'Pp3c16_18830' => 'ppa', 'Pp3c16_20260' => 'ppa', 'Pp3c20_13380' => 'ppa', 'Pp3c6_7990' => 'ppa', 'Pp3c8_15610' => 'ppa', 'Pp3c9_24570' => 'ppa', 'Pp3c9_4650' => 'ppa', 'PRCOL_00001863' => 'pco', 'Prupe.1G444000' => 'ppe', 'Prupe.2G272600' => 'ppe', 'Prupe.3G056600' => 'ppe', 'Prupe.4G002000' => 'ppe', 'Prupe.6G196200' => 'ppe', 'Prupe.7G216700' => 'ppe', 'Psat0s2550g0200' => 'psa', 'Psat0s2633g0040' => 'psa', 'Psat1g050040' => 'psa', 'Psat2g081160' => 'psa', 'Psat2g103320' => 'psa', 'Psat4g116320' => 'psa', 'Psat5g018280' => 'psa', 'Psat5g235840' => 'psa', 'Psat5g235960' => 'psa', 'Psat5g239400' => 'psa', 'Psat5g295240' => 'psa', 'Psat6g171120' => 'psa', 'Psat7g018520' => 'psa', 'PSO017G3545' => 'pso', 'PSO063G0723' => 'pso', 'PSO063G4055' => 'pso', 'PSO210G4627' => 'pso', 'PSO210G5937' => 'pso', 'PSO478G2145' => 'pso', 'PSO675G4062' => 'pso', 'PSO832G2627' => 'pso', 'PSO832G3237' => 'pso', 'QL02p040450' => 'qlo', 'QL05p019066' => 'qlo', 'QL05p019070' => 'qlo', 'QL05p066507' => 'qlo', 'QL06p047549' => 'qlo', 'QL09p027964' => 'qlo', 'QL12p040881' => 'qlo', 'RcHm_v2.0_Chr1g0373651' => 'rch', 'RcHm_v2.0_Chr2g0092311' => 'rch', 'RcHm_v2.0_Chr2g0111921' => 'rch', 'RcHm_v2.0_Chr2g0141061' => 'rch', 'RcHm_v2.0_Chr5g0000241' => 'rch', 'RcHm_v2.0_Chr6g0257101' => 'rch', 'RcHm_v2.0_Chr6g0306751' => 'rch', 'Rhsim02G0088500' => 'rsi', 'Rhsim02G0109700' => 'rsi', 'Rhsim02G0155700' => 'rsi', 'Rhsim03G0161300' => 'rsi', 'Rhsim03G0235700' => 'rsi', 'Rhsim07G0145200' => 'rsi', 'Rhsim08G0014700' => 'rsi', 'Rhsim10G0171500' => 'rsi', 'RhsimUnG0174600' => 'rsi', 'Sabra03G0109400' => 'sbr', 'Sabra06G0002000' => 'sbr', 'Sabra06G0120800' => 'sbr', 'Sabra06G0183500' => 'sbr', 'Sabra07G0007800' => 'sbr', 'Sabra16G0006400' => 'sbr', 'Sabra18G0060800' => 'sbr', 'SalBow1G2056' => 'sbo', 'SalBow1G7914' => 'sbo', 'SalBow3G3485' => 'sbo', 'SalBow4G2727' => 'sbo', 'SalBow8G0889' => 'sbo', 'SalBow8G1856' => 'sbo', 'Sc03g0000280' => 'sci', 'Sc08g0008130' => 'sci', 'Sc09g0009480' => 'sci', 'Sc09g0009500' => 'sci', 'Sc10g0003660' => 'sci', 'Sc18g0001640' => 'sci', 'Sc24g0000040' => 'sci', 'Sc24g0000490' => 'sci', 'Sed0001661' => 'sed', 'Sed0004264' => 'sed', 'Sed0007645' => 'sed', 'Sed0011041' => 'sed', 'Sed0015495' => 'sed', 'Sed0018382' => 'sed', 'Sed0022038' => 'sed', 'Sed0022042' => 'sed', 'Sed0022686' => 'sed', 'SEGI_13529' => 'sgi', 'SEGI_17651' => 'sgi', 'SEGI_17697' => 'sgi', 'SEGI_27208' => 'sgi', 'SEGI_36503' => 'sgi', 'SEGI_39836' => 'sgi', 'SGA_v2.0_scaffold163G38050' => 'sas', 'SGA_v2.0_scaffold169G38671' => 'sas', 'SGA_v2.0_scaffold195G40835' => 'sas', 'SGA_v2.0_scaffold28G11952' => 'sas', 'SGA_v2.0_scaffold548G52855' => 'sas', 'SGA_v2.0_scaffold60G20814' => 'sas', 'SGA_v2.0_scaffold7G03669' => 'sas', 'SHI21974' => 'shi', 'SHI24421' => 'shi', 'SMO118G0481' => 'smo', 'SMO133G0024' => 'smo', 'SMO141G0165' => 'smo', 'SMO361G0093' => 'smo', 'Solyc03g093520.3' => 'sly', 'Solyc04g014270.3' => 'sly', 'Solyc04g015200.3' => 'sly', 'Solyc04g072580.1' => 'sly', 'Solyc07g045160.3' => 'sly', 'Solyc08g066067.1' => 'sly', 'Solyc08g066100.3' => 'sly', 'Solyc11g010450.2' => 'sly', 'Solyc12g095880.2' => 'sly', 'Sopen03g024340' => 'spe', 'Sopen04g006390' => 'spe', 'Sopen04g007240' => 'spe', 'Sopen04g028780' => 'spe', 'Sopen04g028790' => 'spe', 'Sopen07g023710' => 'spe', 'Sopen08g019730' => 'spe', 'Sopen08g019770' => 'spe', 'Sopen08g019800' => 'spe', 'Sopen11g005230' => 'spe', 'Sopen12g031780' => 'spe', 'Sp2g24790' => 'spa', 'Sp4g01500' => 'spa', 'Sp6g18410' => 'spa', 'Sp7g24260' => 'spa', 'Sp7g27150' => 'spa', 'Sp7g30610' => 'spa', 'Sp7g35740' => 'spa', 'TAR374G1098' => 'tar', 'TAR375G0574' => 'tar', 'TAR375G1037' => 'tar', 'TAR383G0504' => 'tar', 'TAR624G0659' => 'tar', 'TAR628G0077' => 'tar', 'TAR629G2296' => 'tar', 'TAR636G1177' => 'tar', 'TAR636G2890' => 'tar', 'THA.LOC104803746' => 'tha', 'THA.LOC104803999' => 'tha', 'THA.LOC104804170' => 'tha', 'THA.LOC104806748' => 'tha', 'THA.LOC104811728' => 'tha', 'THA.LOC104813484' => 'tha', 'THA.LOC104814585' => 'tha', 'THA.LOC104817745' => 'tha', 'Thecc.01G092600' => 'tca', 'Thecc.03G148800' => 'tca', 'Thecc.06G102100' => 'tca', 'Thecc.06G243000' => 'tca', 'Thecc.09G048800' => 'tca', 'Thecc.09G097000' => 'tca', 'Thhalv10000117m.g' => 'esa', 'Thhalv10000886m.g' => 'esa', 'Thhalv10003971m.g' => 'esa', 'Thhalv10013372m.g' => 'esa', 'Thhalv10024824m.g' => 'esa', 'Thhalv10024871m.g' => 'esa', 'Thhalv10025029m.g' => 'esa', 'Thhalv10025143m.g' => 'esa', 'TPR.G12318' => 'tpr', 'TPR.G13226' => 'tpr', 'TPR.G13399' => 'tpr', 'TPR.G14617' => 'tpr', 'TPR.G15253' => 'tpr', 'TPR.G18938' => 'tpr', 'TPR.G21745' => 'tpr', 'TPR.G29975' => 'tpr', 'TPR.G39022' => 'tpr', 'TPR.G39029' => 'tpr', 'TPR.G39671' => 'tpr', 'TPR.G6016' => 'tpr', 'TPR.G6505' => 'tpr', 'TWI18G0453' => 'twi', 'TWI34G0062' => 'twi', 'TWI34G0352' => 'twi', 'TWI39G0287' => 'twi', 'TWI53G0564' => 'twi', 'TWI63G1372' => 'twi', 'TWI74G0724' => 'twi', 'unitig_32.g11065' => 'ugi', 'unitig_37.g12925' => 'ugi', 'unitig_46.g18404' => 'ugi', 'unitig_52.g17771' => 'ugi', 'unitig_578.g16581' => 'ugi', 'unitig_899.g14558' => 'ugi', 'vmacro03242' => 'vma', 'vmacro05267' => 'vma', 'vmacro06261' => 'vma', 'vmacro06262' => 'vma', 'vmacro06837' => 'vma', 'vmacro12992' => 'vma', 'vmacro15721' => 'vma', 'vmacro15722' => 'vma', 'vmacro18571' => 'vma', 'vmacro18842' => 'vma', 'VMungo0251G0351' => 'vmu', 'VMungo0251G2695' => 'vmu', 'VMungo0464G0708' => 'vmu', 'VMungo0720G2209' => 'vmu', 'VMungo0720G2315' => 'vmu', 'VMungo1080G1731' => 'vmu', 'VMungo1215G0145' => 'vmu', 'VMungo1215G1570' => 'vmu', 'VMungo1309G2645' => 'vmu', 'Zm00001eb041270' => 'zma', 'Zm00001eb048390' => 'zma', 'Zm00001eb099530' => 'zma', 'Zm00001eb121310' => 'zma', 'Zm00001eb153830' => 'zma', 'Zm00001eb174380' => 'zma', 'Zm00001eb270890' => 'zma', 'Zm00001eb284270' => 'zma', 'Zm00001eb293530' => 'zma', 'Zm00001eb337520' => 'zma', 'Zm00001eb350090' => 'zma', 'Zm00001eb376780' => 'zma', 'Zm00001eb424620' => 'zma' ) $gf_id = 'HOM05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000640' ) $data_identifier = 'HOM05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 27, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 12, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 15, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 13, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424620' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1